Biomedical Imaging Research Unit
Software
Computers within the Biomedical Imaging Research Unit are available for image processing and analysis.
There are no user charges for staff and students of The University of Auckland, however you still need to be an authorised user in order to make a booking using the BIRU Scheduler.
BIRU staff can offer individualised support and training for the following packages
- ImageJ/Fiji
- MetaMorph - includes a number of application modules
- Image-Pro Plus 3D - includes the SharpStack deconvolution module
- ZEN - includes Intellesis and colocalization modules as well as Airyscan processing
- Fluoview - full licence - includes spectral deconvolution
- Amira - includes deconvolution
Virtual machine for VSlide Data on the NECTAR Cloud
The Nectar Research Cloud is a service of the Australian Research Data Commons (ARDC).
The Australian Research Data Commons (ARDC) is enabled by the National Collaborative Research Infrastructure Strategy Program (NCRIS).
This VM runs VS Viewer, Fiji and iLastik and is designed to support image processing and analysis of the very large data sets acquired on the VSlide slide scanner.
Software support
Ratish Kurian
IT Systems Specialist - BIRU, Technical Services
Email: r.kurian@auckland.ac.nz
Jacqueline Ross
Lead Technologist, Technical Services
Email: jacqui.ross@auckland.ac.nz
Richard Yulo
Technical Manager/Senior Technologist
Email: richard.yulo@auckland.ac.nz
