Biomedical Imaging Research Unit

Image processing/analysis - online learning forum - contributors list of recommended resources for Bioimage analysis

EPFL MOOC - image processing and analysis

Cornell University Institute of Biotechnology - ImageJ scripting tutorial

NEUBIAS Academy - training in Bioimage analysis

Open source software

  • ImageJ: for image analysis and image processing
  • Fiji - version of ImageJ with additional plugins built-in plus more support for scripting
  • Cell Profiler - for analysing cell images
  • BioImageXD: for 3D volume and surface rendering
  • Icy - bioimage analysis
  • ilastik - interactive machine learning
  • QuPath - software for whole slide viewer and analysis
  • Irfanview
  • OMERO - open source database