MEDSCI 300 : Analytical Anatomy and Visualisation

Medical and Health Sciences

2024 Semester Two (1245) (15 POINTS)

Course Prescription

Examines the analysis, description and quantification of anatomical structures, including visualisation methodologies and the challenges of imaging subcellular to whole organ anatomy. Emphasis is placed on emerging applications and technology, including computational anatomy, surgical planning and research applications. Appropriate uses of human tissue, modern imaging technologies, tissue preparation, imaging artefacts, and novel visualisation techniques will be explored.

Course Overview

Visualisation of anatomy is fundamental in understanding both physiology and pathology. Understanding the different imaging modalities and utilising cutting-edge technology, this course gives students the opportunity to expand their knowledge in the discipline and also to transform their academic knowledge into a real-world context in a teamwork setting.

In this course, you will undertake an anatomical visualisation project that transforms your existing knowledge and what you learn in MEDSCI 300 classes into something that adds value/fixes a problem/addresses a gap in the wider community/society.
The artefact can be physical or digital. You can be as imaginative/creative as you like, but be mindful that you only have ~10 weeks to complete and present this project. Make sure that your scope is well-defined and not unrealistically ambitious.
Your final product needs to add value, so avoid recreating something that is already accessible (e.g. models in the MSLC). However, you may seek inspiration from existing resources.

Intended Learning Outcomes (ILOs) of the project
  1. Develop skills and knowledge on the various imaging modalities and 3D modelling techniques for anatomical visualisation.
  2. Create innovative products for anatomical visualisation that is of use to others 
  3. Communicate effectively in a team and develop conflict resolution skills
  4. Plan and effectively manage the project timeline & milestones over the span of 10 weeks.
  5. Critically evaluate and reflect on their own progress throughout the project

Course Requirements

Prerequisite: MEDSCI 201

Course Contacts

Associate Professor Miriam Scadeng
Head of Department of Academic Radiology, Course Director
DDI: +64 9 923 9659
Email: m.scadeng@auckland.ac.nz 

Miss Angela Tsai
Professional Teaching Fellow, Course Coordinator
DDI: +64 9 923 1552
Email: a.tsai@auckland.ac.nz

Capabilities Developed in this Course

Capability 3: Knowledge and Practice
Capability 4: Critical Thinking
Capability 5: Solution Seeking
Capability 6: Communication
Capability 7: Collaboration
Capability 8: Ethics and Professionalism
Graduate Profile: Bachelor of Science

Learning Outcomes

By the end of this course, students will be able to:
  1. Demonstrate the ability to combine anatomical and imaging knowledge to communicate and disseminate anatomical knowledge. (Capability 3, 4, 5, 6 and 7)
  2. Use teamwork to produce a collaborative project/product as a vehicle for achieving Learning Outcome 1. (Capability 6 and 7)
  3. Develop the ability to constructively critique self and others. (Capability 6 and 8)
  4. Identify solutions to various imaging-based anatomical scenarios. (Capability 3, 4 and 5)
  5. Demonstrate excellence in disciplinary knowledge and practice. (Capability 3)

Assessments

Assessment Type Percentage Classification
Test 20% Individual Test
Project 80% Group & Individual Coursework
Assessment Type Learning Outcome Addressed
1 2 3 4 5
Test
Project

Late submission of work/penalties

To apply for an extension, students need to contact the Course Coordinator and supply appropriate documentation (e.g. doctor’s certificate/collaborating note from a counsellor) before the due date. Please note that your application is a request only, and it should not be assumed that an extension will be granted.

Retrospective approval for an extension will be given only in exceptional circumstances.

Except where the Course Coordinator has authorised an extension of time for the submission of student work, work handed in after the deadline will incur a late penalty of 10% (of the total available marks) for each 24-hour period (or part thereof) that the assessment is overdue. This applies to all written work, including but not limited to lab reports, essays, seminar papers/presentations, assignments, posters, etc. Submission of written work is only complete when an electronic copy has been submitted through the appropriate platform (e.g. Turnitin or Canvas). Please retain your submission confirmation e-receipt/take a timestamped screenshot as evidence of timely submission.

Workload Expectations

This course is a standard 15-point course and students are expected to spend 10 hours per week involved in each 15-point course that they are enrolled in. Please note that this 150-hour guideline does not consider

  • diverse student ability/differences in processing and learning speeds; 
  • the extent of prior disciplinary knowledge/solidity of foundation pre-knowledge;
  • differences between cognitively passive or active learning approaches;
  • the level of attainment likely to be achieved with this level of time investment (C- pass vs A-range grades)

For this course, you can expect 36 hours of seminars, 18 hours of labs, with the remaining 96 hours (minimum) to be invested in reading and thinking actively about the content, test preparation, and working on the group project. 

Delivery Mode

Campus Experience

The activities for the course are scheduled as a standard weekly timetable. Most sessions will require students to preview materials, allowing time for hands-on interactive and practical experiences. 

To complete the course, attendance is required at scheduled activities, including seminars and project-related lab/meetings.

The course will not include live online events unless by mutual agreement.

Attendance on campus is required for the test and final project presentations.

Learning Resources

Course materials are made available in a learning and collaboration tool called Canvas which also includes reading lists and lecture recordings (where available).

Please remember that the recording of any class on a personal device requires the permission of the instructor.

Student Feedback

At the end of every semester students will be invited to give feedback on the course and teaching through a tool called SET or Qualtrics. The lecturers and course co-ordinators will consider all feedback and respond with summaries and actions.

Your feedback helps teachers to improve the course and its delivery for future students.

Class Representatives in each class can take feedback to the department and faculty staff-student consultative committees.

In their feedback, MEDSCI 300 students recognised that they gained the following skills from taking this course: independence; leadership; teamwork; problem-solving. They commented that this course feels more like a postgraduate course, rather than an undergraduate one: it was more challenging and exciting, and correspondingly more self-driven and self-determining.

We also received helpful suggestions about improvements that we could make. We will endeavour to address these in time, in future course iterations.

The following is a review by a student who took the course in 2022

"Medsci 300 is quite a new course so you probably won't find many reviews on it. It primarily focuses on different ways that anatomy can be imaged and studied. You will cover topics like MRI, CT scans, ultrasound and various forms of microscopy. The course does not have an exam, instead, it is primarily project-based. The central assessment is a semester-long project that you work on in a group with other students. The project is very customisable to your interests; the brief usually concerns designing a teaching tool for an audience of your choosing. A few examples of past projects include:

  • 3D-printed models of brains
  • Models of foetal neurodevelopment to help MEDSCI 206 students
  • Digital models of the ventricles to aid in teaching the phases of the cardiac cycle.
  • An educational video using a digital model of the foot targeted at ballet dancers to prevent tendon injuries.

The course gives you a good sense of what it is like to work on a long-term project. The various lecturers serve as mentors but coming up with and executing the project is up to you and your group.

The course has a ton of flexibility built into it, packing in many lectures in the first half of the semester and then having minimal contact time in the second half of the semester so that you can focus on your project. This means your schedule will be much more open, especially in the second half of the semester. This is great if your other courses are quite demanding but be careful not to neglect your project. The course also does not have many compulsory labs but it is definitely worth attending them anyway because they are based in the Human Anatomy Lab so they are quite a unique experience and may help with your project depending on the topic."

Academic Integrity

The University of Auckland will not tolerate cheating, or assisting others to cheat, and views cheating in coursework as a serious academic offence. The work that a student submits for grading must be the student's own work, reflecting their learning. Where work from other sources is used, it must be properly acknowledged and referenced. This requirement also applies to sources on the internet. A student's assessed work may be reviewed for potential plagiarism or other forms of academic misconduct, using computerised detection mechanisms.

Class Representatives

Class representatives are students tasked with representing student issues to departments, faculties, and the wider university. If you have a complaint about this course, please contact your class rep who will know how to raise it in the right channels. See your departmental noticeboard for contact details for your class reps.

Inclusive Learning

All students are asked to discuss any impairment related requirements privately, face to face and/or in written form with the course coordinator, lecturer or tutor.

Student Disability Services also provides support for students with a wide range of impairments, both visible and invisible, to succeed and excel at the University. For more information and contact details, please visit the Student Disability Services’ website http://disability.auckland.ac.nz

Special Circumstances

If your ability to complete assessed coursework is affected by illness or other personal circumstances outside of your control, contact a member of teaching staff as soon as possible before the assessment is due.

If your personal circumstances significantly affect your performance, or preparation, for an exam or eligible written test, refer to the University’s aegrotat or compassionate consideration page https://www.auckland.ac.nz/en/students/academic-information/exams-and-final-results/during-exams/aegrotat-and-compassionate-consideration.html.

This should be done as soon as possible and no later than seven days after the affected test or exam date.

Owing to the nature of the group project, it is extremely important that students communicate with staff as soon as issues arise, so that options may be explored in partnership with all parties concerned. It will be difficult for special dispensations to be accommodated otherwise.

Learning Continuity

In the event of an unexpected disruption, we undertake to maintain the continuity and standard of teaching and learning in all your courses throughout the year. If there are unexpected disruptions the University has contingency plans to ensure that access to your course continues and course assessment continues to meet the principles of the University’s assessment policy. Some adjustments may need to be made in emergencies. You will be kept fully informed by your course co-ordinator/director, and if disruption occurs you should refer to the university website for information about how to proceed.

The delivery mode may change depending on COVID restrictions. Any changes will be communicated through Canvas.

Student Charter and Responsibilities

The Student Charter assumes and acknowledges that students are active participants in the learning process and that they have responsibilities to the institution and the international community of scholars. The University expects that students will act at all times in a way that demonstrates respect for the rights of other students and staff so that the learning environment is both safe and productive. For further information visit Student Charter https://www.auckland.ac.nz/en/students/forms-policies-and-guidelines/student-policies-and-guidelines/student-charter.html.

Disclaimer

Elements of this outline may be subject to change. The latest information about the course will be available for enrolled students in Canvas.

In this course students may be asked to submit coursework assessments digitally. The University reserves the right to conduct scheduled tests and examinations for this course online or through the use of computers or other electronic devices. Where tests or examinations are conducted online remote invigilation arrangements may be used. In exceptional circumstances changes to elements of this course may be necessary at short notice. Students enrolled in this course will be informed of any such changes and the reasons for them, as soon as possible, through Canvas.